Parse the CSQ field added to the `VCF` file by the Variant Effect Predictor (VEP)

Source: R/parse_vep_csq.R

Parse the CSQ field added to the `VCF` file by the Variant Effect Predictor (VEP)

parse_vep_csq(vcf_path, vcf_df)

Arguments

vcf_path

path to where the `.vcf` file for one sample is saved.
vcf_df

`R` object returned by `parse_vcf_output()` after parsing relevant fields from the `VCF` file.

Value

data frame with VEP annoation fields added as columns.